PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01237.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 162aa    MW: 17979 Da    PI: 4.5803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01237.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.7e-1058852754
                      AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54
                             k +r++lg+f taeeAa a++ a+k+++
  Rsa1.0_01237.1_g00006.1 58 KGTRVWLGTFNTAEEAAMAYDVAAKRIR 85
                             349**********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.7622394IPR001471AP2/ERF domain
SMARTSM003802.2E-1238100IPR001471AP2/ERF domain
PfamPF008471.0E-65685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-175795IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-125795IPR016177DNA-binding domain
CDDcd000183.68E-175896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAVCNFAPLN YRNGVESGGG GEIEEGATYG EKKEEESLRR DTQASIGEMG VRDTIFRKGT  60
RVWLGTFNTA EEAAMAYDVA AKRIRRDKAN LNFPDLLHPS PLTSDDLPPA KKLCVHSQSE  120
LAHPSSPVEL LWHISSLESF FELDGTTAEQ PSQLDESRYV DY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893176e-52AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693826.18e-43PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_013584046.18e-43PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1
RefseqXP_013693827.18e-43PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
RefseqXP_013584047.18e-43PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X2
SwissprotP427361e-38RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078E3G39e-43A0A078E3G3_BRANA; BnaC05g36570D protein
STRINGBra022176.1-P3e-39(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2249524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-29ethylene-responsive element binding protein